Payroll System in the Philippines for Accurate, Automated Payroll Processing

eezi is a cloud-based payroll system in the Philippines that helps businesses automate payroll computation, employee salary calculations, tax and government-mandated deductions, and payroll reporting. Designed for Philippine businesses, eezi makes payroll processing faster, more accurate, and easier to manage.

payroll system in the Philippines
Managing your Philippine payroll system just got eezi

What Is a Payroll System in the Philippines?

A Payroll System in the Philippines is software that automates the process of calculating employee salaries, deductions, taxes, benefits, and other payroll components.

For Philippine businesses, payroll software should support local payroll requirements, including BIR withholding tax, SSS contributions, PhilHealth contributions, Pag-IBIG contributions, 13th-month pay, overtime, holiday pay, night shift differential, allowances, bonuses, and other employee deductions.

eezi brings these payroll processes together in one cloud-based platform, helping businesses reduce spreadsheets and manual calculations while improving payroll accuracy and efficiency.

Automated Payroll Processing for Philippine Businesses

eezi Payroll automates repetitive payroll calculations so your HR team can spend less time managing spreadsheets and manual computations.

eezi Philippine payroll system

The system can help you manage:

Salary & Earnings

  • Basic salaryBasic salary
  • Basic salarySalary adjustments
  • Basic salaryOvertime pay
  • Basic salaryNight shift diff.

Benefits & Incentives

  • Basic salaryAllowances and benefits
  • Basic salaryBonuses and incentives
  • Basic salaryDe minimis benefits
  • Basic salaryHMO packages

Deductions and Loans Teal payroll deductions and loans icon with a receipt, percentage symbol, peso money bag, and coins. Deductions & Loans

  • Basic salaryEmployee deductions
  • Basic salaryEmployee loans

Payroll Setup and Rules Payroll setup icon featuring a payroll document, calculation rules, and a settings gear using the eezi logo color palette. Payroll Setup & Rules

  • Basic salaryPayroll cut-off dates
  • Basic salaryPayroll groups
  • Basic salaryPayroll frequency
  • Basic salaryEmployee groups
  • Basic salaryWorking hours

Philippine Payroll Taxes & Contributions Stylized payroll document with Philippine peso symbol, tax calculation marks, and contribution arrows using the eezi logo color palette. Philippine Payroll Taxes & Contributions

  • Basic salaryGovernment contributions
  • Basic salaryIncome tax calculations
  • Basic salaryWithholding tax calculations

Payroll Reports

  • Basic salaryPayroll reports
  • Basic salaryPayroll summaries
  • Basic salaryPayroll-related reporting

Configure payroll rules for your Philippine workforce based on your company policies, employee groups, employment contracts, working hours, and payroll frequency. eezi Payroll helps automate salary calculations, deductions, taxes, government contributions, and payroll reporting in one cloud-based payroll system.

Philippine Payroll Compliance Made Easier

Managing payroll in the Philippines requires accurate calculations for employee compensation, taxes, and mandatory government contributions.

Document Calculation Icon Flat teal document and calculator icon using the eezi logo color palette.

SSS Contributions

Calculate and manage employee SSS deductions as part of the payroll process.

Health Cross Icon Health and medical cross icon using the eezi logo color palette.

PhilHealth Contributions

Include PhilHealth contributions when calculating employee payroll and deductions.

Pag-IBIG Contributions

Manage Pag-IBIG contributions and other applicable payroll deductions.

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BIR Withholding Tax

Calculate withholding taxes and income tax deductions based on applicable Philippine payroll rules.

Automate payroll calculations. Reduce repetitive work.

By automating these calculations, eezi helps HR and payroll teams reduce manual work and improve consistency across every payroll cycle.

Less Manual Work

Reduce repetitive payroll calculations and data entry.

Consistent Calculations

Apply payroll rules consistently across employees and payroll cycles.

Simpler Payroll Processing

Spend less time checking calculations and more time managing your workforce.

Automate Employee Salary Calculations with eezi

Eliminate repetitive manual payroll computations with eezi’s automated payroll management system. Our payroll module accurately calculates employee salaries, deductions, taxes, allowances, and other payroll components, helping your HR team reduce errors, improve payroll accuracy, and process payroll faster every pay cycle.

With a simple and intuitive interface, eezi makes payroll configuration easy. Customize payroll settings to match your organization’s policies, automate routine payroll tasks, and manage salary calculations confidently—all from one centralized, compliant payroll platform.

an eezi way to compute an employee's salary for your Philippine payroll system

What are the eezi Payroll features?

See the full function of eezi’s software for managing payroll in the Philippines.

Basic salary adjustments

Assign and add allowance type

Add and assign bonus type

Assign and add de minimis

Add and assign deductions

Add and assign loans

Run payroll

Add HMO package

View contribution table

Add adjustments

View payroll reports

Eezi Philippine Payroll System features
eezi Philippine payroll system advantage

Why choose eezi payroll?

Configurable payroll frequency and cut-off dates

More payroll period options

Personal income tax rates computation

Automated mandatory contributions

Error-free tax and payroll deductions

How does it work?

Select your company for configuration.

Make adjustments to items like basic pay, allowances, bonuses, etc.

Set up employee deductions, HMOs, and loans.

Select the payroll type and run payroll.

Generate the bank file and download the CSV.

eezi Payroll Module FAQs

Frequently asked questions about eezi’s payroll module.

Per company, you can add, edit, and delete items like minimum wage, and basic pay. You can also make basic pay adjustments, search by employee, and filter them by a table.

Yes, eezi’s payroll module permits the admin to add an allowance and organize it into a searchable format for easy editing and deletion.

As to the type of allowance, the admin can also add any item, such as meal allowance and the like.

With eezi’s payroll processing module, you can set payroll frequencies and cut-off dates based on your employee database. You can also set payroll groups based on computation, frequency, contributions, and employment contracts.

Plus, you can also set additional pay for special days such as holidays.

Yes, you can create a group for your employees based on employment contract and working hours.

Yes, eezi allows your admin user to set separate night shift differential rules and restrictions. You can also do the same for overtime pay.

Your admin user in charge of the payroll process can add any type of bonuses and then organize, edit, and delete the same.

Aside from the usual salary items, you can also add de minimis benefits and assign them to qualified employees.

Yes. When calculating an employee’s salary, eezi performs tax calculations and makes the appropriate deductions mandated by the Philippine government agencies, such as the following:

  • National Health Insurance Program or the Philippine Health Insurance Corporation (PhilHealth) contribution
  • National Savings Program or Home Development Mutual Fund (Pag-IBIG) contribution
  • Social Security contributions (SSS)
  • Withholding taxes from taxable income
  • Income tax deductions

Yes, eezi’s cloud-based payroll software includes paid leave items like paid maternity leave and other types that you can configure in timekeeping.

You can set as many types of deductions as needed in eezi’s cloud-based payroll system and assign employees under them.

For early adopters of eezi, there is no limit on the payroll runs you can make.

Yes, eezi generates the bank advice for most major banks in the Philippines. Should your preferred bank not be included in our list, you can send us a transmittal format, and we’ll add them for you.

You can generate more than ten types of payroll reports in eezi. These include but are not limited to 13th-month pay, government contributions, loan reports, and other government reports.

Yes, you can use eezi’s software to process the payroll of your employees in the Philippines. However, eezi does not offer global payroll services yet as it only services payroll in the Philippines.

eezi payroll is a robust system that can generate the following reports:

  • 13th Month Pay
  • Allowances Summary
  • Bonuses Summary
  • Deductions Report
  • Employee Payroll Information
  • Employee Salary History
  • Government Contributions
  • Gross Pay Summary
  • Loans Payable Report
  • Loans Report
  • Net Pay Summary
See how these features work in action

See how these features work in action

Automate payroll and do it eezi.

Discover how our system takes all the pain of payroll and saves time and resources for your small business.

Contact

Makati City, PH

9th Floor AIA Tower 8767 Paseo de Roxas, Salcedo Village, Bel-Air, Makati City

(6328) 284-8789

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EZRA

HRIS Specialist, voice of EEZI EZRA is a seasoned HR operations professional with 10+ years helping mid-market businesses untangle payroll chaos, compliance headaches, and manual HR processes. Warm but direct. Confident without being salesy. Empathetic to the pain of legacy systems. Always solution-first. Uses "we" — EZRA speaks as part of the EEZI team, not as a vendor.